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cramino v0.9.0

A tool to quickly extract quality metrics from bam or cram files

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MIT

Dependency Licenses

Apache-2.0 OR MIT157
PackageRelationDependenciesPublished
ahash • 0.8.12A non-cryptographic hash function using AES-NI for high performanceINDIRECT21
android_system_properties • 0.1.5Minimal Android system properties wrapperINDIRECT1
android-tzdata • 0.1.1Parser for the Android-specific tzdata fileINDIRECT0
arrayvec • 0.7.6A vector with fixed capacity, backed by an array (it can be stored on the stack too). Implements fixed capacity ArrayVec and ArrayString.INDIRECT0
autocfg • 1.5.0Automatic cfg for Rust compiler featuresINDIRECT0
bitflags • 1.3.2A macro to generate structures which behave like bitflags. INDIRECT0
bitflags • 2.9.1A macro to generate structures which behave like bitflags. INDIRECT0
blake2 • 0.9.2BLAKE2 hash functionsINDIRECT7
block-buffer • 0.9.0Buffer type for block processing of dataINDIRECT4
block-padding • 0.2.1Padding and unpadding of messages divided into blocks.INDIRECT0
bumpalo • 3.19.0A fast bump allocation arena for Rust.INDIRECT0
bzip2-sys • 0.1.13+1.0.8Bindings to libbzip2 for bzip2 compression and decompression exposed as Reader/Writer streams. INDIRECT11
cc • 1.0.99A build-time dependency for Cargo build scripts to assist in invoking the native C compiler to compile native C code into a static archive to be linked into Rust code. INDIRECT9
cfg-if • 1.0.1A macro to ergonomically define an item depending on a large number of #[cfg] parameters. Structured like an if-else chain, the first matching branch is the item that gets emitted. INDIRECT0
chrono • 0.4.41Date and time library for RustDIRECT36
clap_derive • 3.2.25Parse command line argument by defining a struct, derive crate.INDIRECT8
clap_lex • 0.2.4Minimal, flexible command line parserINDIRECT1
clap • 3.2.25A simple to use, efficient, and full-featured Command Line Argument ParserDIRECT36
cmake • 0.1.53A build dependency for running `cmake` to build a native library INDIRECT10
const-random-macro • 0.1.16Provides the procedural macro used by const-randomINDIRECT7
const-random • 0.1.18Provides compile time random number generation.INDIRECT8
core-foundation-sys • 0.8.7Bindings to Core Foundation for macOSINDIRECT0
crc • 1.8.1Rust implementation of CRC with support of various standardsINDIRECT1
crc32c • 0.6.8Safe implementation for hardware accelerated CRC32C instructions with software fallbackINDIRECT2
crossbeam-channel • 0.5.15Multi-producer multi-consumer channels for message passingINDIRECT1
crossbeam-deque • 0.8.6Concurrent work-stealing dequeINDIRECT2
crossbeam-epoch • 0.9.18Epoch-based garbage collectionINDIRECT1
crossbeam-utils • 0.8.21Utilities for concurrent programmingINDIRECT0
crypto-mac • 0.8.0Trait for Message Authentication Code (MAC) algorithmsINDIRECT4
ctor • 0.1.26__attribute__((constructor)) for RustDIRECT4
custom_derive • 0.1.7(Note: superseded by `macro-attr`) This crate provides a macro that enables the use of custom derive attributes.INDIRECT0
digest • 0.9.0Traits for cryptographic hash functions and message authentication codesINDIRECT3
either • 1.15.0The enum `Either` with variants `Left` and `Right` is a general purpose sum type with two cases. INDIRECT0
env_logger • 0.8.4A logging implementation for `log` which is configured via an environment variable. DIRECT24
form_urlencoded • 1.2.1Parser and serializer for the application/x-www-form-urlencoded syntax, as used by HTML forms.INDIRECT1
fs-utils • 1.1.4Utilities to help working with the filesytemINDIRECT1
futures-cpupool • 0.1.8An implementation of thread pools which hand out futures to the results of the computation on the threads themselves. INDIRECT4
futures • 0.1.31An implementation of futures and streams featuring zero allocations, composability, and iterator-like interfaces. INDIRECT0
getrandom • 0.1.16A small cross-platform library for retrieving random data from system sourceINDIRECT3
getrandom • 0.2.16A small cross-platform library for retrieving random data from system sourceINDIRECT3
getrandom • 0.3.3A small cross-platform library for retrieving random data from system sourceINDIRECT6
glob • 0.3.2Support for matching file paths against Unix shell style patterns. INDIRECT0
half • 2.6.0Half-precision floating point f16 and bf16 types for Rust implementing the IEEE 754-2008 standard binary16 and bfloat16 types.INDIRECT2
hashbrown • 0.12.3A Rust port of Google's SwissTable hash mapINDIRECT0
heck • 0.4.1heck is a case conversion library.INDIRECT0
hermit-abi • 0.1.19Hermit system calls definitions.INDIRECT1
hermit-abi • 0.5.2Hermit system calls definitions.INDIRECT0
histo_fp • 0.2.1Simple histograms with configurable floating point buckets and floating point samples DIRECT19
humantime • 2.2.0A parser and formatter for std::time::{Duration, SystemTime}INDIRECT0
iana-time-zone-haiku • 0.1.2iana-time-zone support crate for Haiku OSINDIRECT10
iana-time-zone • 0.1.63get the IANA time zone for the current systemINDIRECT32
idna_adapter • 1.1.0Back end adapter for idnaINDIRECT6
idna • 1.0.3IDNA (Internationalizing Domain Names in Applications) and Punycode.INDIRECT9
ieee754 • 0.2.6Low-level manipulations of IEEE754 floating-point numbers. INDIRECT0
indexmap • 1.9.3A hash table with consistent order and fast iteration.INDIRECT2
itertools • 0.10.5Extra iterator adaptors, iterator methods, free functions, and macros.DIRECT1
itoa • 1.0.15Fast integer primitive to string conversionINDIRECT0
jobserver • 0.1.33An implementation of the GNU Make jobserver for Rust. INDIRECT7
js-sys • 0.3.77Bindings for all JS global objects and functions in all JS environments like Node.js and browsers, built on `#[wasm_bindgen]` using the `wasm-bindgen` crate. INDIRECT14
lazy_static • 1.5.0A macro for declaring lazily evaluated statics in Rust.INDIRECT0
lexical-core • 0.8.5Lexical, to- and from-string conversion routines.INDIRECT6
lexical-parse-float • 0.8.5Efficient parsing of floats from strings.INDIRECT3
lexical-parse-integer • 0.8.6Efficient parsing of integers from strings.INDIRECT2
lexical-util • 0.8.5Shared utilities for lexical creates.INDIRECT1
lexical-write-float • 0.8.5Efficient formatting of floats to strings.INDIRECT3
lexical-write-integer • 0.8.5Efficient formatting of integers to strings.INDIRECT2
libc • 0.2.174Raw FFI bindings to platform libraries like libc.INDIRECT0
libz-sys • 1.1.22Low-level bindings to the system libz library (also known as zlib).INDIRECT13
linear-map • 1.2.0A map implemented by searching linearly in a vector.INDIRECT0
log • 0.4.27A lightweight logging facade for Rust DIRECT0
lzma-sys • 0.1.20Raw bindings to liblzma which contains an implementation of LZMA and xz stream encoding/decoding. High level Rust bindings are available in the `xz2` crate. INDIRECT11
md-5 • 0.9.1MD5 hash functionINDIRECT7
multiversion-macros • 0.6.1Implementation crate for multiversionINDIRECT4
multiversion • 0.6.1Easy function multiversioningINDIRECT5
newtype_derive • 0.1.6This crate provides macros for deriving common traits for newtype structures.INDIRECT2
num_cpus • 1.17.0Get the number of CPUs on a machine.INDIRECT2
num-bigint • 0.4.6Big integer implementation for RustINDIRECT3
num-complex • 0.4.6Complex numbers implementation for RustINDIRECT2
num-integer • 0.1.46Integer traits and functionsINDIRECT2
num-iter • 0.1.45External iterators for generic mathematicsINDIRECT3
num-rational • 0.4.1Rational numbers implementation for RustINDIRECT4
num-traits • 0.2.19Numeric traits for generic mathematicsINDIRECT1
num • 0.4.2A collection of numeric types and traits for Rust, including bigint, complex, rational, range iterators, generic integers, and more! INDIRECT7
once_cell • 1.21.3Single assignment cells and lazy values.INDIRECT0
opaque-debug • 0.3.1Macro for opaque Debug trait implementationINDIRECT0
openssl-src • 300.5.1+3.5.1Source of OpenSSL and logic to build it. INDIRECT10
os_str_bytes • 6.6.1Lossless functionality for platform-native strings INDIRECT0
percent-encoding • 2.3.1Percent encoding and decodingINDIRECT0
pkg-config • 0.3.32A library to run the pkg-config system tool at build time in order to be used in Cargo build scripts. INDIRECT0
ppv-lite86 • 0.2.21Cross-platform cryptography-oriented low-level SIMD library.INDIRECT6
proc-macro-error-attr • 1.0.4Attribute macro for proc-macro-error crateINDIRECT4
proc-macro-error • 1.0.4Almost drop-in replacement to panics in proc-macrosINDIRECT6
proc-macro2 • 1.0.95A substitute implementation of the compiler's `proc_macro` API to decouple token-based libraries from the procedural macro use case.INDIRECT1
quick-error • 1.2.3 A macro which makes error types pleasant to write. INDIRECT0
quote • 1.0.40Quasi-quoting macro quote!(...)INDIRECT2
rand_chacha • 0.2.2ChaCha random number generator INDIRECT12
rand_core • 0.5.1Core random number generator traits and tools for implementation. INDIRECT4
rand_core • 0.9.3Core random number generator traits and tools for implementation. INDIRECT0
rand_hc • 0.2.0HC128 random number generator INDIRECT5
rand • 0.7.3Random number generators and other randomness functionality. INDIRECT14
rand • 0.9.1Random number generators and other randomness functionality. INDIRECT1
rayon-core • 1.12.1Core APIs for RayonINDIRECT3
rayon • 1.10.0Simple work-stealing parallelism for RustDIRECT5
regex-syntax • 0.6.29A regular expression parser.INDIRECT0
regex • 1.7.3An implementation of regular expressions for Rust. This implementation uses finite automata and guarantees linear time matching on all inputs. INDIRECT3
rustc_version • 0.1.7A library for querying the version of a installed rustc compilerINDIRECT1
rustc_version • 0.4.1A library for querying the version of a installed rustc compilerINDIRECT1
rustc-serialize • 0.3.25Generic serialization/deserialization support corresponding to the `derive(RustcEncodable, RustcDecodable)` mode in the compiler. Also includes support for hex, base64, and json encoding and decoding. This crate is deprecated in favor of serde. INDIRECT0
rustversion • 1.0.21Conditional compilation according to rustc compiler versionINDIRECT0
semver • 0.1.20Parser and evaluator for Cargo's flavor of Semantic VersioningINDIRECT0
semver • 1.0.26Parser and evaluator for Cargo's flavor of Semantic VersioningINDIRECT0
serde_derive • 1.0.210Macros 1.1 implementation of #[derive(Serialize, Deserialize)]INDIRECT4
serde_json • 1.0.140A JSON serialization file formatINDIRECT9
serde • 1.0.210A generic serialization/deserialization frameworkINDIRECT5
shaman • 0.1.0A pure-Rust, cross-platform implementation of various common hashing algorithms.INDIRECT3
smallvec • 1.15.1'Small vector' optimization: store up to a small number of items on the stackINDIRECT0
static_assertions • 1.1.0Compile-time assertions to ensure that invariants are met.INDIRECT0
syn • 1.0.109Parser for Rust source codeINDIRECT3
syn • 2.0.56Parser for Rust source codeINDIRECT3
thiserror-impl • 1.0.65Implementation detail of the `thiserror` crateINDIRECT4
thiserror • 1.0.65derive(Error)INDIRECT5
typenum • 1.18.0Typenum is a Rust library for type-level numbers evaluated at compile time. It currently supports bits, unsigned integers, and signed integers. It also provides a type-level array of type-level numbers, but its implementation is incomplete.INDIRECT0
unicode-bidi • 0.3.18Implementation of the Unicode Bidirectional AlgorithmINDIRECT0
unicode-normalization • 0.1.24This crate provides functions for normalization of Unicode strings, including Canonical and Compatible Decomposition and Recomposition, as described in Unicode Standard Annex #15. INDIRECT2
unicode-width • 0.1.14Determine displayed width of `char` and `str` types according to Unicode Standard Annex #11 rules. INDIRECT0
unicode-width • 0.2.1Determine displayed width of `char` and `str` types according to Unicode Standard Annex #11 rules. INDIRECT0
unzip-n • 0.1.2Procedural macro to generate `unzip` for iterators over n-sized tuplesDIRECT4
url • 2.5.4URL library for Rust, based on the WHATWG URL StandardINDIRECT12
utf8_iter • 1.0.4Iterator by char over potentially-invalid UTF-8 in &[u8]INDIRECT0
vcpkg • 0.2.15A library to find native dependencies in a vcpkg tree at build time in order to be used in Cargo build scripts. INDIRECT0
vec_map • 0.8.2A simple map based on a vector for small integer keysINDIRECT0
version_check • 0.9.5Tiny crate to check the version of the installed/running rustc.INDIRECT0
wasm-bindgen-backend • 0.2.100Backend code generation of the wasm-bindgen tool INDIRECT7
wasm-bindgen-macro-support • 0.2.100The part of the implementation of the `#[wasm_bindgen]` attribute that is not in the shared backend crate INDIRECT8
wasm-bindgen-macro • 0.2.100Definition of the `#[wasm_bindgen]` attribute, an internal dependency INDIRECT9
wasm-bindgen-shared • 0.2.100Shared support between wasm-bindgen and wasm-bindgen cli, an internal dependency. INDIRECT1
wasm-bindgen • 0.2.100Easy support for interacting between JS and Rust. INDIRECT13
whirlpool • 0.9.0Whirlpool hash functionINDIRECT7
winapi-i686-pc-windows-gnu • 0.4.0Import libraries for the i686-pc-windows-gnu target. Please don't use this crate directly, depend on winapi instead.INDIRECT0
winapi-x86_64-pc-windows-gnu • 0.4.0Import libraries for the x86_64-pc-windows-gnu target. Please don't use this crate directly, depend on winapi instead.INDIRECT0
winapi • 0.3.9Raw FFI bindings for all of Windows API.INDIRECT2
windows_aarch64_gnullvm • 0.52.6Import lib for WindowsINDIRECT0
windows_aarch64_msvc • 0.52.6Import lib for WindowsINDIRECT0
windows_i686_gnu • 0.52.6Import lib for WindowsINDIRECT0
windows_i686_gnullvm • 0.52.6Import lib for WindowsINDIRECT0
windows_i686_msvc • 0.52.6Import lib for WindowsINDIRECT0
windows_x86_64_gnu • 0.52.6Import lib for WindowsINDIRECT0
windows_x86_64_gnullvm • 0.52.6Import lib for WindowsINDIRECT0
windows_x86_64_msvc • 0.52.6Import lib for WindowsINDIRECT0
windows-core • 0.61.2Core type support for COM and WindowsINDIRECT9
windows-implement • 0.60.0The implement macro for the windows crateINDIRECT4
windows-interface • 0.59.1The interface macro for the windows crateINDIRECT4
windows-link • 0.1.3Linking for WindowsINDIRECT0
windows-result • 0.3.4Windows error handlingINDIRECT1
windows-strings • 0.4.2Windows string typesINDIRECT1
windows-sys • 0.59.0Rust for WindowsINDIRECT9
windows-targets • 0.52.6Import libs for WindowsINDIRECT8
MIT23
PackageRelationDependenciesPublished
ansi_term • 0.12.1Library for ANSI terminal colours and styles (bold, underline)INDIRECT3
atty • 0.2.14A simple interface for querying attyINDIRECT5
bio-types • 1.0.0A collection of common biomedical types for use in rust-bio and rust-htslib.INDIRECT16
blake • 2.0.2Implementation of the BLAKE hash function for Rust via FFIINDIRECT10
build_const • 0.2.2library for creating importable constants from build.rs or a scriptINDIRECT0
checksums • 0.9.1Tool for making/verifying checksums of directory treesDIRECT79
clap • 2.34.0A simple to use, efficient, and full-featured Command Line Argument ParserINDIRECT12
crc16 • 0.4.0A CRC16 implementationINDIRECT0
crc8 • 0.1.1A CRC8 implementationINDIRECT0
crunchy • 0.2.4Crunchy unroller: deterministically unroll constant loopsINDIRECT0
curl-sys • 0.4.82+curl-8.14.1Native bindings to the libcurl libraryINDIRECT26
derive-new • 0.5.9`#[derive(new)]` implements simple constructor functions for structs and enums.INDIRECT4
generic-array • 0.14.7Generic types implementing functionality of arraysINDIRECT2
hts-sys • 2.2.0This library provides HTSlib bindings.INDIRECT32
md6 • 2.0.3Implementation of the MD6 hash function for Rust via FFIINDIRECT10
openssl-sys • 0.9.109FFI bindings to OpenSSLINDIRECT13
pbr • 1.1.1Console progress bar for RustINDIRECT6
rust-htslib • 0.39.5This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.DIRECT70
strsim • 0.10.0Implementations of string similarity metrics. Includes Hamming, Levenshtein, OSA, Damerau-Levenshtein, Jaro, Jaro-Winkler, and Sørensen-Dice. INDIRECT0
strsim • 0.8.0Implementations of string similarity metrics. Includes Hamming, Levenshtein, OSA, Damerau-Levenshtein, Jaro, Jaro-Winkler, and Sørensen-Dice. INDIRECT0
strum_macros • 0.24.3Helpful macros for working with enums and stringsINDIRECT6
textwrap • 0.11.0Powerful library for word wrapping, indenting, and dedenting stringsINDIRECT1
textwrap • 0.16.2Library for word wrapping, indenting, and dedenting strings. Has optional support for Unicode and emojis as well as machine hyphenation.INDIRECT0
MIT OR Unlicense11
PackageRelationDependenciesPublished
aho-corasick • 0.7.20Fast multiple substring searching.INDIRECT1
byteorder • 1.5.0Library for reading/writing numbers in big-endian and little-endian.INDIRECT0
csv-core • 0.1.12Bare bones CSV parsing with no_std support.INDIRECT1
csv • 1.3.1Fast CSV parsing with support for serde.INDIRECT10
memchr • 2.7.5Provides extremely fast (uses SIMD on x86_64, aarch64 and wasm32) routines for 1, 2 or 3 byte search and single substring search. INDIRECT0
same-file • 1.0.6A simple crate for determining whether two file paths point to the same file. INDIRECT11
streaming-stats • 0.1.29Experimental crate for computing basic statistics on streams.INDIRECT2
tabwriter • 1.4.1Elastic tabstops.INDIRECT1
termcolor • 1.4.1A simple cross platform library for writing colored text to a terminal. INDIRECT11
walkdir • 2.5.0Recursively walk a directory.INDIRECT12
winapi-util • 0.1.9A dumping ground for high level safe wrappers over windows-sys.INDIRECT10
Apache-2.04
PackageRelationDependenciesPublished
arrow • 22.0.0Rust implementation of Apache ArrowDIRECT83
flatbuffers • 2.1.2Official FlatBuffers Rust runtime library.INDIRECT8
noisy_float • 0.1.15Contains floating point types that panic if they are set to an illegal value, such as NaNINDIRECT2
unicode-joining-type • 1.0.0Fast lookup of the Unicode Joining Type and Joining Group propertiesINDIRECT0
Apache-2.0 OR MIT OR Apache-2.0 WITH LLVM-exception4
PackageRelationDependenciesPublished
wasi • 0.11.1+wasi-snapshot-preview1Experimental WASI API bindings for RustINDIRECT0
wasi • 0.14.2+wasi-0.2.4WASI API bindings for RustINDIRECT2
wasi • 0.9.0+wasi-snapshot-preview1WASI API bindings for RustINDIRECT0
wit-bindgen-rt • 0.39.0Runtime support for the `wit-bindgen` crate INDIRECT1
Unicode-3.0 AND (Apache-2.0 OR MIT)2
PackageRelationDependenciesPublished
idna_mapping • 1.1.0UTS 46 mapping for unicode-rs back end of idnaINDIRECT1
unicode-ident • 1.0.18Determine whether characters have the XID_Start or XID_Continue properties according to Unicode Standard Annex #31INDIRECT0
Apache-2.0 OR BSD-2-Clause OR MIT2
PackageRelationDependenciesPublished
zerocopy-derive • 0.8.26Custom derive for traits from the zerocopy crateINDIRECT4
zerocopy • 0.8.26Zerocopy makes zero-cost memory manipulation effortless. We write "unsafe" so you don't have to.INDIRECT5
Apache-2.0 OR MIT OR Zlib2
PackageRelationDependenciesPublished
tinyvec_macros • 0.1.1Some macros for tiny containersINDIRECT0
tinyvec • 1.9.0`tinyvec` provides 100% safe vec-like data structures.INDIRECT1
Apache-2.0 OR CC0-1.0 OR Apache-2.0 WITH LLVM-exception1
PackageRelationDependenciesPublished
blake3 • 1.5.3the BLAKE3 hash functionINDIRECT13
CC0-1.01
PackageRelationDependenciesPublished
tiny-keccak • 2.0.2An implementation of Keccak derived functions.INDIRECT1
BSD-2-Clause1
PackageRelationDependenciesPublished
arrayref • 0.3.9Macros to take array references of slicesINDIRECT0
Apache-2.0 OR CC0-1.0 OR MIT-01
PackageRelationDependenciesPublished
constant_time_eq • 0.3.1Compares two equal-sized byte strings in constant time.INDIRECT0
Apache-2.0 OR BSL-1.01
PackageRelationDependenciesPublished
ryu • 1.0.20Fast floating point to string conversionINDIRECT0
Apache-2.0 OR LGPL-2.1-or-later OR MIT1
PackageRelationDependenciesPublished
r-efi • 5.3.0UEFI Reference Specification Protocol Constants and DefinitionsINDIRECT0
BSD-3-Clause1
PackageRelationDependenciesPublished
subtle • 2.6.1Pure-Rust traits and utilities for constant-time cryptographic implementations.INDIRECT0
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