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seq_io v0.3.2

Fast FASTA and FASTQ readers

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Package Licenses

MIT

Dependency Licenses

Apache-2.0 OR MIT89
PackageRelationDependenciesPublished
anes • 0.1.6ANSI Escape Sequences provider & parserINDIRECT0
anstyle • 1.0.8ANSI text stylingINDIRECT0
anyhow • 1.0.91Flexible concrete Error type built on std::error::ErrorINDIRECT0
autocfg • 1.4.0Automatic cfg for Rust compiler featuresINDIRECT0
bit-set • 0.5.3A set of bitsINDIRECT1
bit-vec • 0.6.3A vector of bitsINDIRECT0
buffer-redux • 1.0.1Drop-in replacements for buffered I/O in `std::io` with extra features.DIRECT1
bv • 0.11.1Bit-vectors and bit-slicesINDIRECT7
bytecount • 0.6.8count occurrences of a given byte, or the number of UTF-8 code points, in a byte slice, fastINDIRECT0
cast • 0.3.0Ergonomic, checked cast functions for primitive typesINDIRECT0
cc • 1.1.31A build-time dependency for Cargo build scripts to assist in invoking the native C compiler to compile native C code into a static archive to be linked into Rust code. INDIRECT1
cfg-if • 1.0.0A macro to ergonomically define an item depending on a large number of #[cfg] parameters. Structured like an if-else chain, the first matching branch is the item that gets emitted. INDIRECT0
clap_builder • 4.5.20A simple to use, efficient, and full-featured Command Line Argument ParserINDIRECT2
clap_lex • 0.7.2Minimal, flexible command line parserINDIRECT0
clap • 4.5.20A simple to use, efficient, and full-featured Command Line Argument ParserINDIRECT3
crc32fast • 1.4.2Fast, SIMD-accelerated CRC32 (IEEE) checksum computationINDIRECT1
criterion-plot • 0.5.0Criterion's plotting libraryINDIRECT3
criterion • 0.5.1Statistics-driven micro-benchmarking libraryDIRECT53
crossbeam-utils • 0.8.20Utilities for concurrent programmingDIRECT0
custom_derive • 0.1.7(Note: superseded by `macro-attr`) This crate provides a macro that enables the use of custom derive attributes.INDIRECT0
either • 1.13.0The enum `Either` with variants `Left` and `Right` is a general purpose sum type with two cases. INDIRECT0
enum-map-derive • 0.17.0Macros 1.1 implementation of #[derive(Enum)]INDIRECT4
enum-map • 2.7.3A map with C-like enum keys represented internally as an arrayINDIRECT5
feature-probe • 0.1.1Probe for rustc features from build.rsINDIRECT0
fixedbitset • 0.4.2FixedBitSet is a simple bitset collectionINDIRECT0
flate2 • 1.0.34DEFLATE compression and decompression exposed as Read/BufRead/Write streams. Supports miniz_oxide and multiple zlib implementations. Supports zlib, gzip, and raw deflate streams. INDIRECT9
fxhash • 0.2.1A fast, non-secure, hashing algorithm derived from an internal hasher used in FireFox and Rustc.INDIRECT1
getrandom • 0.2.15A small cross-platform library for retrieving random data from system sourceINDIRECT3
half • 2.4.1Half-precision floating point f16 and bf16 types for Rust implementing the IEEE 754-2008 standard binary16 and bfloat16 types.INDIRECT2
hashbrown • 0.12.3A Rust port of Google's SwissTable hash mapINDIRECT0
heck • 0.4.1heck is a case conversion library.INDIRECT0
hermit-abi • 0.4.0Hermit system calls definitions.INDIRECT0
indexmap • 1.9.3A hash table with consistent order and fast iteration.INDIRECT2
itertools-num • 0.1.3Numerical iterator tools. Extra iterators and iterator methods and functions. INDIRECT3
itertools • 0.10.5Extra iterator adaptors, iterator methods, free functions, and macros.INDIRECT1
itertools • 0.11.0Extra iterator adaptors, iterator methods, free functions, and macros.INDIRECT1
itoa • 1.0.11Fast integer primitive to string conversionINDIRECT0
lazy_static • 1.5.0A macro for declaring lazily evaluated statics in Rust.DIRECT0
libc • 0.2.161Raw FFI bindings to platform libraries like libc. INDIRECT0
libm • 0.2.8libm in pure RustINDIRECT0
libz-sys • 1.1.20Low-level bindings to the system libz library (also known as zlib).INDIRECT4
matrixmultiply • 0.3.9General matrix multiplication for f32 and f64 matrices. Operates on matrices with general layout (they can use arbitrary row and column stride). Detects and uses AVX or SSE2 on x86 platforms transparently for higher performance. Uses a microkernel strategy, so that the implementation is easy to parallelize and optimize. Supports multithreading.INDIRECT2
multimap • 0.9.1A multimap implementation.INDIRECT6
ndarray • 0.15.6An n-dimensional array for general elements and for numerics. Lightweight array views and slicing; views support chunking and splitting.INDIRECT7
newtype_derive • 0.1.6This crate provides macros for deriving common traits for newtype structures.INDIRECT2
num-complex • 0.4.6Complex numbers implementation for RustINDIRECT3
num-rational • 0.4.1Rational numbers implementation for RustINDIRECT4
num-traits • 0.2.19Numeric traits for generic mathematicsINDIRECT2
once_cell • 1.20.2Single assignment cells and lazy values.INDIRECT0
paste • 1.0.15Macros for all your token pasting needsINDIRECT0
petgraph • 0.6.3Graph data structure library. Provides graph types and graph algorithms.INDIRECT4
pkg-config • 0.3.31A library to run the pkg-config system tool at build time in order to be used in Cargo build scripts. INDIRECT0
ppv-lite86 • 0.2.20Implementation of the crypto-simd API for x86INDIRECT7
proc-macro2 • 1.0.89A substitute implementation of the compiler's `proc_macro` API to decouple token-based libraries from the procedural macro use case.INDIRECT1
quote • 1.0.37Quasi-quoting macro quote!(...)INDIRECT2
rand_chacha • 0.3.1ChaCha random number generator INDIRECT13
rand_core • 0.6.4Core random number generator traits and tools for implementation. INDIRECT4
rand_distr • 0.4.3Sampling from random number distributions DIRECT18
rand_isaac • 0.3.0ISAAC random number generator DIRECT5
rand • 0.8.5Random number generators and other randomness functionality. DIRECT14
rawpointer • 0.2.1Extra methods for raw pointers and `NonNull<T>`. For example `.post_inc()` and `.pre_dec()` (c.f. `ptr++` and `--ptr`), `offset` and `add` for `NonNull<T>`, and the function `ptrdistance`. INDIRECT0
regex-syntax • 0.6.29A regular expression parser.INDIRECT0
regex • 1.7.3An implementation of regular expressions for Rust. This implementation uses finite automata and guarantees linear time matching on all inputs. INDIRECT3
rustc_version • 0.1.7A library for querying the version of a installed rustc compilerINDIRECT1
rustversion • 1.0.18Conditional compilation according to rustc compiler versionINDIRECT0
semver • 0.1.20Parser and evaluator for Cargo's flavor of Semantic VersioningINDIRECT0
serde_derive • 1.0.210Macros 1.1 implementation of #[derive(Serialize, Deserialize)]DIRECT4
serde_json • 1.0.132A JSON serialization file formatINDIRECT9
serde • 1.0.210A generic serialization/deserialization frameworkDIRECT5
shlex • 1.3.0Split a string into shell words, like Python's shlex.INDIRECT0
syn • 1.0.109Parser for Rust source codeINDIRECT3
syn • 2.0.56Parser for Rust source codeINDIRECT3
thiserror-impl • 1.0.65Implementation detail of the `thiserror` crateINDIRECT4
thiserror • 1.0.65derive(Error)INDIRECT5
tinytemplate • 1.2.1Simple, lightweight template engineINDIRECT10
typenum • 1.17.0Typenum is a Rust library for type-level numbers evaluated at compile time. It currently supports bits, unsigned integers, and signed integers. It also provides a type-level array of type-level numbers, but its implementation is incomplete.INDIRECT0
vcpkg • 0.2.15A library to find native dependencies in a vcpkg tree at build time in order to be used in Cargo build scripts. INDIRECT0
vec_map • 0.8.2A simple map based on a vector for small integer keysINDIRECT6
windows_aarch64_gnullvm • 0.52.6Import lib for WindowsINDIRECT0
windows_aarch64_msvc • 0.52.6Import lib for WindowsINDIRECT0
windows_i686_gnu • 0.52.6Import lib for WindowsINDIRECT0
windows_i686_gnullvm • 0.52.6Import lib for WindowsINDIRECT0
windows_i686_msvc • 0.52.6Import lib for WindowsINDIRECT0
windows_x86_64_gnu • 0.52.6Import lib for WindowsINDIRECT0
windows_x86_64_gnullvm • 0.52.6Import lib for WindowsINDIRECT0
windows_x86_64_msvc • 0.52.6Import lib for WindowsINDIRECT0
windows-sys • 0.52.0Rust for WindowsINDIRECT9
windows-sys • 0.59.0Rust for WindowsINDIRECT9
windows-targets • 0.52.6Import libs for WindowsINDIRECT8
MIT18
PackageRelationDependenciesPublished
bio-types • 1.0.0A collection of common biomedical types for use in rust-bio and rust-htslib.INDIRECT16
bio • 1.6.0A bioinformatics library for Rust. This library provides implementations of many algorithms and data structures that are useful for bioinformatics, but also in other fields.DIRECT81
crunchy • 0.2.2Crunchy unroller: deterministically unroll constant loopsINDIRECT0
derive-new • 0.5.9`#[derive(new)]` implements simple constructor functions for structs and enums.INDIRECT4
editdistancek • 1.0.2Fast algorithm for computing edit distanceINDIRECT0
fastq • 0.6.0A parser for fastqDIRECT14
is-terminal • 0.4.13Test whether a given stream is a terminalINDIRECT12
lz4-sys • 1.11.1+lz4-1.10.0Rust LZ4 sys package.INDIRECT3
lz4 • 1.28.0Rust LZ4 bindings library.INDIRECT4
matches • 0.1.10A macro to evaluate, as a boolean, whether an expression matches a pattern.DIRECT0
oorandom • 11.1.4A tiny, robust PRNG implementation.INDIRECT0
ordered-float • 3.6.0Wrappers for total ordering on floatsINDIRECT3
scoped_threadpool • 0.1.9A library for scoped and cached threadpools.DIRECT0
statrs • 0.16.1Statistical computing library for RustINDIRECT35
strum_macros • 0.24.3Helpful macros for working with enums and stringsINDIRECT6
strum_macros • 0.25.3Helpful macros for working with enums and stringsINDIRECT6
strum • 0.25.0Helpful macros for working with enums and stringsINDIRECT0
triple_accel • 0.4.0Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance calculations and string search.INDIRECT0
MIT OR Unlicense8
PackageRelationDependenciesPublished
aho-corasick • 0.7.20Fast multiple substring searching.INDIRECT1
byteorder • 1.5.0Library for reading/writing numbers in big-endian and little-endian.INDIRECT0
csv-core • 0.1.11Bare bones CSV parsing with no_std support.INDIRECT1
csv • 1.3.0Fast CSV parsing with support for serde.INDIRECT10
memchr • 2.7.4Provides extremely fast (uses SIMD on x86_64, aarch64 and wasm32) routines for 1, 2 or 3 byte search and single substring search. DIRECT0
same-file • 1.0.6A simple crate for determining whether two file paths point to the same file. INDIRECT11
walkdir • 2.5.0Recursively walk a directory.INDIRECT12
winapi-util • 0.1.9A dumping ground for high level safe wrappers over windows-sys.INDIRECT10
Apache-2.06
PackageRelationDependenciesPublished
approx • 0.5.1Approximate floating point equality comparisons and assertions.INDIRECT3
ciborium-io • 0.2.2Simplified Read/Write traits for no_std usageINDIRECT0
ciborium-ll • 0.2.2Low-level CBOR codec primitivesINDIRECT4
ciborium • 0.2.2serde implementation of CBOR using ciborium-basicINDIRECT11
nalgebra-macros • 0.1.0Procedural macros for nalgebraINDIRECT4
simba • 0.6.0SIMD algebra for RustINDIRECT9
Apache-2.0 OR MIT OR Zlib4
PackageRelationDependenciesPublished
bytemuck • 1.19.0A crate for mucking around with piles of bytes.INDIRECT0
miniz_oxide • 0.8.0DEFLATE compression and decompression library rewritten in Rust based on minizINDIRECT1
safe_arch • 0.7.2Crate that exposes `core::arch` safely via `#[cfg()]`.INDIRECT1
wide • 0.7.28A crate to help you go wide.INDIRECT2
Apache-2.0 OR BSD-2-Clause OR MIT2
PackageRelationDependenciesPublished
zerocopy-derive • 0.7.35Custom derive for traits from the zerocopy crateINDIRECT4
zerocopy • 0.7.35Utilities for zero-copy parsing and serializationINDIRECT6
unknown1
PackageRelationDependenciesPublished
num-integer • 0.1.46Integer traits and functionsINDIRECT3
BSD-3-Clause1
PackageRelationDependenciesPublished
nalgebra • 0.29.0General-purpose linear algebra library with transformations and statically-sized or dynamically-sized matrices.INDIRECT33
Apache-2.0 OR BSL-1.01
PackageRelationDependenciesPublished
ryu • 1.0.18Fast floating point to string conversionINDIRECT0
Unicode-DFS-2016 AND (Apache-2.0 OR MIT)1
PackageRelationDependenciesPublished
unicode-ident • 1.0.13Determine whether characters have the XID_Start or XID_Continue properties according to Unicode Standard Annex #31INDIRECT0
0BSD OR Apache-2.0 OR MIT1
PackageRelationDependenciesPublished
adler2 • 2.0.0A simple clean-room implementation of the Adler-32 checksumINDIRECT0
Apache-2.0 OR MIT OR Apache-2.0 WITH LLVM-exception1
PackageRelationDependenciesPublished
wasi • 0.11.0+wasi-snapshot-preview1Experimental WASI API bindings for RustINDIRECT0
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