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filter-clipped v0.3.1

A bam/sam util to filter out highly clipped NGS reads from alignment files

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MIT

Dependency Licenses

Apache-2.0 OR MIT75
PackageRelationDependenciesPublished
autocfg • 1.5.0Automatic cfg for Rust compiler featuresINDIRECT0
bitflags • 1.3.2A macro to generate structures which behave like bitflags. INDIRECT0
bitflags • 2.9.1A macro to generate structures which behave like bitflags. INDIRECT0
bzip2-sys • 0.1.13+1.0.8Bindings to libbzip2 for bzip2 compression and decompression exposed as Reader/Writer streams. INDIRECT11
cc • 1.0.99A build-time dependency for Cargo build scripts to assist in invoking the native C compiler to compile native C code into a static archive to be linked into Rust code. INDIRECT9
cfg-if • 1.0.1A macro to ergonomically define an item depending on a large number of #[cfg] parameters. Structured like an if-else chain, the first matching branch is the item that gets emitted. INDIRECT0
clap_derive • 3.2.25Parse command line argument by defining a struct, derive crate.INDIRECT8
clap_lex • 0.2.4Minimal, flexible command line parserINDIRECT1
clap • 3.2.25A simple to use, efficient, and full-featured Command Line Argument ParserDIRECT36
cmake • 0.1.53A build dependency for running `cmake` to build a native library INDIRECT10
custom_derive • 0.1.7(Note: superseded by `macro-attr`) This crate provides a macro that enables the use of custom derive attributes.INDIRECT0
env_logger • 0.9.3A logging implementation for `log` which is configured via an environment variable. DIRECT24
form_urlencoded • 1.2.1Parser and serializer for the application/x-www-form-urlencoded syntax, as used by HTML forms.INDIRECT1
fs-utils • 1.1.4Utilities to help working with the filesytemINDIRECT1
getrandom • 0.3.3A small cross-platform library for retrieving random data from system sourceINDIRECT6
glob • 0.3.2Support for matching file paths against Unix shell style patterns. INDIRECT0
hashbrown • 0.12.3A Rust port of Google's SwissTable hash mapINDIRECT0
heck • 0.4.1heck is a case conversion library.INDIRECT0
hermit-abi • 0.1.19Hermit system calls definitions.INDIRECT1
humantime • 2.2.0A parser and formatter for std::time::{Duration, SystemTime}INDIRECT0
idna_adapter • 1.1.0Back end adapter for idnaINDIRECT6
idna • 1.0.3IDNA (Internationalizing Domain Names in Applications) and Punycode.INDIRECT9
ieee754 • 0.2.6Low-level manipulations of IEEE754 floating-point numbers. INDIRECT0
indexmap • 1.9.3A hash table with consistent order and fast iteration.INDIRECT2
jobserver • 0.1.33An implementation of the GNU Make jobserver for Rust. INDIRECT7
lazy_static • 1.5.0A macro for declaring lazily evaluated statics in Rust.INDIRECT0
libc • 0.2.174Raw FFI bindings to platform libraries like libc.INDIRECT0
libz-sys • 1.1.22Low-level bindings to the system libz library (also known as zlib).INDIRECT13
linear-map • 1.2.0A map implemented by searching linearly in a vector.INDIRECT0
log • 0.4.27A lightweight logging facade for Rust DIRECT0
lzma-sys • 0.1.20Raw bindings to liblzma which contains an implementation of LZMA and xz stream encoding/decoding. High level Rust bindings are available in the `xz2` crate. INDIRECT11
newtype_derive • 0.1.6This crate provides macros for deriving common traits for newtype structures.INDIRECT2
once_cell • 1.21.3Single assignment cells and lazy values.INDIRECT0
openssl-src • 300.5.0+3.5.0Source of OpenSSL and logic to build it. INDIRECT10
os_str_bytes • 6.6.1Lossless functionality for platform-native strings INDIRECT0
percent-encoding • 2.3.1Percent encoding and decodingINDIRECT0
pkg-config • 0.3.32A library to run the pkg-config system tool at build time in order to be used in Cargo build scripts. INDIRECT0
proc-macro-error-attr • 1.0.4Attribute macro for proc-macro-error crateINDIRECT4
proc-macro-error • 1.0.4Almost drop-in replacement to panics in proc-macrosINDIRECT6
proc-macro2 • 1.0.95A substitute implementation of the compiler's `proc_macro` API to decouple token-based libraries from the procedural macro use case.INDIRECT1
quick-error • 1.2.3 A macro which makes error types pleasant to write. INDIRECT0
quote • 1.0.40Quasi-quoting macro quote!(...)INDIRECT2
regex-syntax • 0.6.29A regular expression parser.INDIRECT0
regex • 1.7.3An implementation of regular expressions for Rust. This implementation uses finite automata and guarantees linear time matching on all inputs. INDIRECT3
rstest_macros • 0.14.0Rust fixture based test framework. It use procedural macro to implement fixtures and table based tests. INDIRECT7
rstest • 0.15.0Rust fixture based test framework. It use procedural macro to implement fixtures and table based tests. DIRECT8
rustc_version • 0.1.7A library for querying the version of a installed rustc compilerINDIRECT1
rustc_version • 0.4.1A library for querying the version of a installed rustc compilerINDIRECT1
rustversion • 1.0.21Conditional compilation according to rustc compiler versionINDIRECT0
semver • 0.1.20Parser and evaluator for Cargo's flavor of Semantic VersioningINDIRECT0
semver • 1.0.26Parser and evaluator for Cargo's flavor of Semantic VersioningINDIRECT0
smallvec • 1.15.1'Small vector' optimization: store up to a small number of items on the stackINDIRECT0
syn • 1.0.109Parser for Rust source codeINDIRECT3
syn • 2.0.104Parser for Rust source codeINDIRECT2
thiserror-impl • 1.0.69Implementation detail of the `thiserror` crateINDIRECT4
thiserror • 1.0.69derive(Error)INDIRECT5
unicode-bidi • 0.3.18Implementation of the Unicode Bidirectional AlgorithmINDIRECT0
unicode-normalization • 0.1.24This crate provides functions for normalization of Unicode strings, including Canonical and Compatible Decomposition and Recomposition, as described in Unicode Standard Annex #15. INDIRECT2
url • 2.5.4URL library for Rust, based on the WHATWG URL StandardINDIRECT12
utf8_iter • 1.0.4Iterator by char over potentially-invalid UTF-8 in &[u8]INDIRECT0
vcpkg • 0.2.15A library to find native dependencies in a vcpkg tree at build time in order to be used in Cargo build scripts. INDIRECT0
version_check • 0.9.5Tiny crate to check the version of the installed/running rustc.INDIRECT0
winapi-i686-pc-windows-gnu • 0.4.0Import libraries for the i686-pc-windows-gnu target. Please don't use this crate directly, depend on winapi instead.INDIRECT0
winapi-x86_64-pc-windows-gnu • 0.4.0Import libraries for the x86_64-pc-windows-gnu target. Please don't use this crate directly, depend on winapi instead.INDIRECT0
winapi • 0.3.9Raw FFI bindings for all of Windows API.INDIRECT2
windows_aarch64_gnullvm • 0.52.6Import lib for WindowsINDIRECT0
windows_aarch64_msvc • 0.52.6Import lib for WindowsINDIRECT0
windows_i686_gnu • 0.52.6Import lib for WindowsINDIRECT0
windows_i686_gnullvm • 0.52.6Import lib for WindowsINDIRECT0
windows_i686_msvc • 0.52.6Import lib for WindowsINDIRECT0
windows_x86_64_gnu • 0.52.6Import lib for WindowsINDIRECT0
windows_x86_64_gnullvm • 0.52.6Import lib for WindowsINDIRECT0
windows_x86_64_msvc • 0.52.6Import lib for WindowsINDIRECT0
windows-sys • 0.59.0Rust for WindowsINDIRECT9
windows-targets • 0.52.6Import libs for WindowsINDIRECT8
MIT10
PackageRelationDependenciesPublished
atty • 0.2.14A simple interface for querying attyINDIRECT5
bio-types • 1.0.0A collection of common biomedical types for use in rust-bio and rust-htslib.INDIRECT16
curl-sys • 0.4.82+curl-8.14.1Native bindings to the libcurl libraryINDIRECT26
derive-new • 0.5.9`#[derive(new)]` implements simple constructor functions for structs and enums.INDIRECT4
hts-sys • 2.2.0This library provides HTSlib bindings.INDIRECT32
openssl-sys • 0.9.109FFI bindings to OpenSSLINDIRECT13
rust-htslib • 0.39.5This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.DIRECT70
strsim • 0.10.0Implementations of string similarity metrics. Includes Hamming, Levenshtein, OSA, Damerau-Levenshtein, Jaro, Jaro-Winkler, and Sørensen-Dice. INDIRECT0
strum_macros • 0.24.3Helpful macros for working with enums and stringsINDIRECT6
textwrap • 0.16.2Library for word wrapping, indenting, and dedenting strings. Has optional support for Unicode and emojis as well as machine hyphenation.INDIRECT0
MIT OR Unlicense5
PackageRelationDependenciesPublished
aho-corasick • 0.7.20Fast multiple substring searching.INDIRECT1
byteorder • 1.5.0Library for reading/writing numbers in big-endian and little-endian.INDIRECT0
memchr • 2.7.5Provides extremely fast (uses SIMD on x86_64, aarch64 and wasm32) routines for 1, 2 or 3 byte search and single substring search. INDIRECT0
termcolor • 1.4.1A simple cross platform library for writing colored text to a terminal. INDIRECT11
winapi-util • 0.1.9A dumping ground for high level safe wrappers over windows-sys.INDIRECT10
Unicode-3.0 AND (Apache-2.0 OR MIT)2
PackageRelationDependenciesPublished
idna_mapping • 1.1.0UTS 46 mapping for unicode-rs back end of idnaINDIRECT1
unicode-ident • 1.0.18Determine whether characters have the XID_Start or XID_Continue properties according to Unicode Standard Annex #31INDIRECT0
Apache-2.0 OR MIT OR Zlib2
PackageRelationDependenciesPublished
tinyvec_macros • 0.1.1Some macros for tiny containersINDIRECT0
tinyvec • 1.9.0`tinyvec` provides 100% safe vec-like data structures.INDIRECT1
Apache-2.0 OR MIT OR Apache-2.0 WITH LLVM-exception2
PackageRelationDependenciesPublished
wasi • 0.14.2+wasi-0.2.4WASI API bindings for RustINDIRECT2
wit-bindgen-rt • 0.39.0Runtime support for the `wit-bindgen` crate INDIRECT1
Apache-2.0 OR LGPL-2.1-or-later OR MIT1
PackageRelationDependenciesPublished
r-efi • 5.3.0UEFI Reference Specification Protocol Constants and DefinitionsINDIRECT0
Apache-2.01
PackageRelationDependenciesPublished
unicode-joining-type • 1.0.0Fast lookup of the Unicode Joining Type and Joining Group propertiesINDIRECT0
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